Objective To observe and compare the effects of intraocular pressure (IOP) drop when the aqueous humor was drained to limbus, ambitus and posterior segment of rabbit eye by implanting medical silicone tube. Methods Forty-five healthy New Zealand white rabbits were chosen for the experimental group, each with the medical silicone tube implanted in one eye. According to different implanting ways, the rabbits were divided into the limbus group, ambitus group and posterior segment group respectively, with 15 rabbits in each group. Results According to statistical comparison of preoperative and postoperative IOP values among the 3 groups within 4 weeks, the IOP of the posterior segment group was decreased most by 26.6%, and that of the ambitus group and limbal group was decreased by 16.2% and 1.2%, respectively. The differences between the preoperative and postoperative IOP in first, second and fourth week were statistically significant (P<0.01) for all three groups. The IOP of the posterior segment group after 4 weeks was decreased most, and there were significant differences in IOP values among three groups (P<0.01). Conclusions The greatest IOP drop occurred when the aqueous humor was drained to the posterior segment of the rabbit eye, and this result could provide some reference for the clinical surgery.